Genomics
Proteomics
Metabolomics
Data analysis, integration & stewardship
Special Issue on Software Tools and Resources: Acknowledging the Toolmakers of Science.
Weintraub, ST. et al. (2019). J Proteome Res. 18, 575.
PaDuA: A Python Library for High-Throughput (Phospho)proteomics Data Analysis.
Ressa, A. et al. (2019). J Proteome Res. 18, 576-584.
Presence of Genetic Variants Among Young Men With COVID-19.
Van der Made, Cl. (2020). JAMA.
Mutational signature in colorectal cancer caused by genotoxic pks + E. coli.
Pleguezuelos-Manzano, C. et al. (2020). Nature.
SARS-CoV-2 productively infects human gut enterocytes.
Lamers, MM. et al. (2020). Science.
Reproducibility of Targeted Lipidome Analyses (Lipidyzer) in Plasma and Erythrocytes over a 6-Week Period
Loef, M. et al. (2020). Metabolites.
Inhibition of ∆24-dehydrocholesterol reductase activates pro-resolving lipid mediator biosynthesis and inflammation resolution.
Körner, A. et al. (2019). Proc Natl Acad Sci U S A. 116, 20623 – 20634.
Cholesterol Metabolism Is a Druggable Axis that Independently Regulates Tau and Amyloid-β in iPSC-Derived Alzheimer’s Disease Neurons.
van der Kant, R. et al. (2019). Cell Stem Cell. 24, 363-275.
Fast LC-ESI-MS/MS analysis and influence of sampling conditions for gut metabolites in plasma and serum.
van der Laan, T. et al. (2019). Sci Rep. 9, 12370.
High-Resolution mRNA and Secretome Atlas of Human Enteroendocrine Cells.
Beumer, J. et al. (2020). Cell.
Metabolic changes related to the IDH1 mutation in gliomas preserve TCA-cycle activity: An investigation at the protein level.
Dekker, LJM. et al. (2020). FASEB J. 34, 3646 – 3657.
SARS-CoV-2 productively infects human gut enterocytes.
Lamers, MM. et al. (2020). Science.
Integrating Serum Protein Electrophoresis with Mass Spectrometry, A New Workflow for M-Protein Detection and Quantification.
Zajec, M. et al. (2020). J Proteome Res.
Highly sensitive CE-ESI-MS analysis of N-glycans from complex biological samples.
Lageveen-Kammeijer, GSM. et al. (2019). Nat Commun. 10, 2137.
Automated workflow composition in mass spectrometry-based proteomics.
Palmblad, M. et al. (2019). Bioinformatics. 35, 656 – 664.
Special Issue on Software Tools and Resources: Acknowledging the Toolmakers of Science.
Weintraub, ST. et al. (2019). J Proteome Res. 18, 575.
First Community-Wide, Comparative Cross-Linking Mass Spectrometry Study.
Lacobucci, C. et al. (2019). Anal Chem. 91, 6953-6961.
Recommendations for performing, interpreting and reporting hydrogen deuterium exchange mass spectrometry (HDX-MS) experiments.
Masson, GR. et al. (2019). Nat Methods. 16, 595-602.
PaDuA: A Python Library for High-Throughput (Phospho)proteomics Data Analysis.
Ressa, A. et al. (2019). J Proteome Res. 18, 576-584.
Expanding the mass range for UVPD-based native top-down mass spectrometry.
Greisch, JF. et al. (2019). Chem Sci. 10, 7163-7171.
Targeting proline in (phospho)proteomics.
van der Laarse, SAM. et al. (2019). FEBS J.
This research was (partially) funded by NWO, project 184.034.019